What is Protein2GeneTree?
Protein2GeneTree is a gene tree correction method that takes as input a protein tree and a species tree, and build an optimal gene tree minimizing the double reconciliation cost with the protein tree and the species tree.
Kuitche, E., Lafond, M., & Ouangraoua, A. (2017). Reconstructing protein and gene phylogenies using reconciliation and soft-clustering. Journal of bioinformatics and computational biology, 15(06), 1740007.